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Thermostable actophorin

Analyse Thermostable actophorin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7SOG
Type: protein
Length: 262 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Actophorin
UniProt: P37167
Ligands: NI
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Actophorin	protein	135	32% helix, 27% strand	P37167
B	Actophorin	protein	127	34% helix, 27% strand	P37167

Ligands and binding sites

NI · Nickel (II) ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.54	0.80	36	empty

Interfaces

1 interface between chains.

A–B · 499 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

7SOG · Thermostable actophorin · the same entry in another collection · chain A against A, TM-score 1.00
P37167 · AlphaFold monomer V2.0 prediction for actophorin (P37167) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P37167
Elsewhere: RCSB PDB 7SOG · PDBe 7SOG · UniProt P37167

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