Research workbench
Crystal structure of a peptide chain release factor 3 (prfc) from stenotrophomonas maltophilia bound to GDP
Analyse Crystal structure of a peptide chain release factor 3 (prfc) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SIQ
- Type
- protein
- Length
- 524 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide chain release factor 3
- UniProt
- B2FR00
- Ligands
- GDP
- Pockets
- 9 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide chain release factor 3 | protein | 524 | 31% helix, 28% strand | B2FR00 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.72 | 0.92 | 30 | empty |
| 2 | 75 | 0.45 | 0.82 | 22 | empty |
| 3 | 67 | 0.42 | 0.81 | 22 | empty |
| 4 | 73 | 0.40 | 0.79 | 21 | empty |
| 5 | 94 | 0.37 | 0.75 | 14 | empty |
Compared structures
- 7SIQ · Crystal structure of a peptide chain release factor 3 (prfC) from Stenotrophomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- B2FR00 · AlphaFold monomer V2.0 prediction for peptide chain release factor 3 (B2FR00) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2FR00
- Elsewhere: RCSB PDB 7SIQ · PDBe 7SIQ · UniProt B2FR00
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