Research workbench
Structure of OC43 spike in complex with polyclonal FAB2 (donor 1412)
Analyse Structure of OC43 spike in complex with polyclonal FAB2 (donor 1412) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SB4
- Type
- protein
- Length
- 3,739 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A7U1BGV5
- Ligands
- 8Z9, NAG, BMA
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1176 | — | A0A7U1BGV5 |
| C | — | protein | 1173 | — | A0A7U1BGV5 |
| B | — | protein | 1180 | — | A0A7U1BGV5 |
| H | — | protein | 111 | — | — |
| L | — | protein | 99 | — | — |
Ligands and binding sites
- 8Z9 · Sapienic acid · ligand · 3 copies · chains A, C, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 53 copies · chains A, C, B
- BMA · beta-D-mannopyranose · sugar · 2 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SB4 · Structure of OC43 spike in complex with polyclonal Fab2 (Donor 1412) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A7U1BGV5
- Elsewhere: RCSB PDB 7SB4 · PDBe 7SB4 · UniProt A0A7U1BGV5
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