Research workbench
Ylq-SG3 TCR in complex with SARS-cov-2 spike-derived peptide S269-277 (ylqprtfll) presented by HLA-A*02:01
Analyse Ylq-SG3 TCR in complex with SARS-cov-2 spike-derived peptide S269-277… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RTR
- Type
- protein
- Length
- 811 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q53Z42, P61769, P0DTC2
- Ligands
- NA
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 266 | — | Q53Z42 |
| B | — | protein | 100 | — | P61769 |
| C | — | protein | 9 | — | P0DTC2 |
| D | — | protein | 197 | — | — |
| E | — | protein | 239 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RTR · YLQ-SG3 TCR in complex with SARS-CoV-2 Spike-derived peptide S269-277 (YLQPRTFLL)… · the same entry in another collection · chain A against A, TM-score 1.00
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53Z42
- Every structure of UniProt P61769
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7RTR · PDBe 7RTR · UniProt Q53Z42 · UniProt P61769 · UniProt P0DTC2
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