Research workbench
Crystal structure of NS1-ed of vietnam influenza a virus in complex with the P85-beta-ISH2 domain of human PI3K
Analyse Crystal structure of NS1-ed of vietnam influenza a virus in complex with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7RCH
- Type
- protein
- Length
- 518 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-structural protein 1; Phosphatidylinositol 3-kinase regulatory subunit beta
- UniProt
- A5A5U1, O00459
- Pockets
- 3 · best druggability 0.86
Structure
x-ray diffraction · 4 distinct chains · 56% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-structural protein 1 | protein | 126 | 21% helix, 39% strand | A5A5U1 |
| C | Phosphatidylinositol 3-kinase regulatory subunit beta | protein | 129 | 86% helix, 0% strand | O00459 |
| B | Non-structural protein 1 | protein | 119 | 24% helix, 43% strand | A5A5U1 |
| D | Phosphatidylinositol 3-kinase regulatory subunit beta | protein | 144 | 85% helix, 0% strand | O00459 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 548 | 0.86 | 0.92 | 69 | empty |
| 2 | 69 | 0.37 | 0.78 | 15 | empty |
| 3 | 78 | 0.35 | 0.76 | 15 | empty |
Interfaces
5 interfaces between chains.
- B–D · 866 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 836 Ų buried · 7 hydrogen bonds · protein-protein
- C–B · 627 Ų buried · 6 hydrogen bonds · protein-protein
- A–D · 569 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 192 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7RCH · Crystal structure of NS1-ED of Vietnam influenza A virus in complex with the… · the same entry in another collection · chain A against A, TM-score 1.00
- O00459 · AlphaFold monomer V2.0 prediction for phosphatidylinositol 3-kinase regulatory subunit… · a predicted model of the same protein · chain C against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5A5U1
- Every structure of UniProt O00459
- Elsewhere: RCSB PDB 7RCH · PDBe 7RCH · UniProt A5A5U1 · UniProt O00459
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