Research workbench
The structure of human ABCG5-WT/ABCG8-I419E
Analyse The structure of human ABCG5-WT/ABCG8-I419E in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7R87
- Type
- protein
- Length
- 1,369 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-binding cassette sub-family G member 5; ATP-binding cassette sub-family G member 8…
- EC
- 7.6.2.-
- UniProt
- Q9H222, Q9H221
- Pockets
- 18 · best druggability 0.81
Structure
electron microscopy · 4 distinct chains · 47% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-binding cassette sub-family G member 5 | protein | 586 | 56% helix, 10% strand | Q9H222 |
| B | ATP-binding cassette sub-family G member 8 (EC 7.6.2.-) | protein | 564 | 54% helix, 10% strand | Q9H221 |
| C | 2C7 Fab heavy chain | protein | 114 | 3% helix, 40% strand | — |
| D | 2C7 Fab light chain | protein | 105 | 3% helix, 50% strand | — |
Pockets
18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 428 | 0.81 | 0.88 | 44 | empty |
| 2 | 639 | 0.76 | 0.82 | 45 | empty |
| 3 | 667 | 0.75 | 0.81 | 85 | empty |
| 4 | 608 | 0.72 | 0.80 | 84 | empty |
| 5 | 61 | 0.70 | 0.97 | 23 | empty |
Interfaces
5 interfaces between chains.
- A–B · 2925 Ų buried · 27 hydrogen bonds · protein-protein
- C–D · 804 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 470 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 391 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 51 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 7R87 · The structure of human ABCG5-WT/ABCG8-I419E · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H222 · AlphaFold monomer V2.0 prediction for ATP-binding cassette sub-family G member 5 (Q9H222) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q9H221 · AlphaFold monomer V2.0 prediction for ATP-binding cassette sub-family G member 8 (Q9H221) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H222
- Every structure of UniProt Q9H221
- Elsewhere: RCSB PDB 7R87 · PDBe 7R87 · UniProt Q9H222 · UniProt Q9H221
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