Research workbench
TMEM106B filaments with fold iib from multiple system atrophy (case 19)
Analyse TMEM106B filaments with fold iib from multiple system atrophy (case 19) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QWL
- Type
- protein
- Length
- 405 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transmembrane protein 106B
- UniProt
- Q9NUM4
- Pockets
- 2 · best druggability 0.54
Structure
electron microscopy · 1 distinct chain · 0% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Transmembrane protein 106B | protein | 135 | 0% helix, 59% strand | Q9NUM4 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 296 | 0.54 | 0.74 | 34 | empty |
| 2 | 244 | 0.53 | 0.76 | 27 | empty |
Interfaces
3 interfaces between chains.
- B–C · 5921 Ų buried · 162 hydrogen bonds · protein-protein
- A–B · 5908 Ų buried · 152 hydrogen bonds · protein-protein
- A–C · 65 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 7QWL · TMEM106B filaments with Fold IIb from Multiple system atrophy (case 19) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NUM4 · AlphaFold monomer V2.0 prediction for transmembrane protein 106B (Q9NUM4) · a predicted model of the same protein · chain A against A, TM-score 0.19
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUM4
- Elsewhere: RCSB PDB 7QWL · PDBe 7QWL · UniProt Q9NUM4
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