Research workbench
Serial synchrotron crystallographic structure of drosophila melanogaster (6-4) photolyase
Analyse Serial synchrotron crystallographic structure of drosophila melanogaster (6-4)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QUT
- Type
- protein
- Length
- 500 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RE11660P
- UniProt
- Q8SXK5
- Ligands
- FAD
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RE11660P | protein | 500 | 50% helix, 7% strand | Q8SXK5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 467 | 0.82 | 0.89 | 47 | FAD, GOL |
| 2 | 225 | 0.78 | 0.91 | 39 | empty |
| 3 | 83 | 0.41 | 0.78 | 20 | empty |
| 4 | 100 | 0.37 | 0.74 | 17 | empty |
Compared structures
- 7QUT · serial synchrotron crystallographic structure of Drosophila Melanogaster (6-4) photolyase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8SXK5
- Elsewhere: RCSB PDB 7QUT · PDBe 7QUT · UniProt Q8SXK5
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