Research workbench
X-ray structure of FAD domain of nqrf of klebsiella pneumoniae
Analyse X-ray structure of FAD domain of nqrf of klebsiella pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QU0
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Na(+)-translocating NADH-quinone reductase subunit F
- EC
- 7.2.1.1
- UniProt
- A6T526
- Ligands
- FAD, F2L
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Na(+)-translocating NADH-quinone reductase subunit F (EC 7.2.1.1) | protein | 279 | 31% helix, 30% strand | A6T526 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- F2L · ~{N}-[2,6-bis(fluoranyl)phenyl]ethanamide · ligand · chains A
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 510 | 0.63 | 0.76 | 62 | FAD, F2L |
Compared structures
- 7QU0 · X-ray structure of FAD domain of NqrF of Klebsiella pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
- A6T526 · AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6T526
- Elsewhere: RCSB PDB 7QU0 · PDBe 7QU0 · UniProt A6T526
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