Research workbench
Structure of the recombinant human gamma-tubulin ring complex 6-spoked assembly intermediate (spokes 7-12, homogeneous dataset)
Analyse Structure of the recombinant human gamma-tubulin ring complex 6-spoked assembly… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QJ1
- Type
- protein
- Length
- 6,287 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gamma-tubulin complex component 5; Mitotic-spindle organizing protein 1; Gamma-tubulin…
- UniProt
- Q96RT8, Q08AG7, Q96CW5, Q9BSJ2, Q9UGJ1, Q96RT7, P23258
- Pockets
- 20 · best druggability 0.89
Structure
electron microscopy · 10 distinct chains · 61% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| l | Gamma-tubulin complex component 5 | protein | 108 | 67% helix, 0% strand | Q96RT8 |
| m, b | Mitotic-spindle organizing protein 1 | protein | 65 | 74% helix, 0% strand | Q08AG7 |
| a | Gamma-tubulin complex component 3 | protein | 116 | 54% helix, 0% strand | Q96CW5 |
| G | Gamma-tubulin complex component 2 | protein | 636 | 60% helix, 3% strand | Q9BSJ2 |
| H | Gamma-tubulin complex component 3 | protein | 594 | 67% helix, 3% strand | Q96CW5 |
| I | Gamma-tubulin complex component 4 | protein | 521 | 62% helix, 2% strand | Q9UGJ1 |
| J | Gamma-tubulin complex component 5 | protein | 534 | 63% helix, 0% strand | Q96RT8 |
| K | Gamma-tubulin complex component 4 | protein | 562 | 67% helix, 2% strand | Q9UGJ1 |
| L | Gamma-tubulin complex component 6 | protein | 566 | 59% helix, 2% strand | Q96RT7 |
| U, V, W, X, Y, Z | Tubulin gamma-1 chain | protein | 420 | 44% helix, 15% strand | P23258 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1015 | 0.89 | 0.90 | 128 | empty |
| 2 | 1197 | 0.86 | 0.87 | 144 | empty |
| 3 | 1054 | 0.84 | 0.85 | 123 | empty |
| 4 | 553 | 0.84 | 0.89 | 86 | empty |
| 5 | 419 | 0.82 | 0.90 | 67 | empty |
Interfaces
31 interfaces between chains.
- K–L · 2138 Ų buried · 13 hydrogen bonds · protein-protein
- b–a · 2135 Ų buried · 8 hydrogen bonds · protein-protein
- G–U · 1955 Ų buried · 17 hydrogen bonds · protein-protein
- H–V · 1933 Ų buried · 12 hydrogen bonds · protein-protein
- l–m · 1873 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7QJ1 · Structure of the recombinant human gamma-Tubulin Ring Complex 6-spoked assembly… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96RT8
- Every structure of UniProt Q08AG7
- Every structure of UniProt Q96CW5
- Every structure of UniProt Q9BSJ2
- Every structure of UniProt Q9UGJ1
- Every structure of UniProt Q96RT7
- Every structure of UniProt P23258
- Elsewhere: RCSB PDB 7QJ1 · PDBe 7QJ1 · UniProt Q96RT8 · UniProt Q08AG7 · UniProt Q96CW5 · UniProt Q9BSJ2 · UniProt Q9UGJ1 · UniProt Q96RT7 · UniProt P23258
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.