Research workbench
Structure of recombinant human gamma-tubulin ring complex 6-spoked assembly intermediate (spokes 7-12)
Analyse Structure of recombinant human gamma-tubulin ring complex 6-spoked assembly… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QJ0
- Type
- protein
- Length
- 6,287 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitotic-spindle organizing protein 1; Gamma-tubulin complex component 3; Gamma-tubulin…
- UniProt
- Q08AG7, Q96CW5, Q96RT8, Q9BSJ2, Q9UGJ1, Q96RT7, P23258
- Pockets
- 20 · best druggability 0.87
Structure
electron microscopy · 10 distinct chains · 61% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| m, b | Mitotic-spindle organizing protein 1 | protein | 65 | 71% helix, 0% strand | Q08AG7 |
| a | Gamma-tubulin complex component 3 | protein | 116 | 48% helix, 0% strand | Q96CW5 |
| l | Gamma-tubulin complex component 5 | protein | 108 | 67% helix, 0% strand | Q96RT8 |
| G | Gamma-tubulin complex component 2 | protein | 636 | 61% helix, 3% strand | Q9BSJ2 |
| H | Gamma-tubulin complex component 3 | protein | 594 | 67% helix, 4% strand | Q96CW5 |
| I | Gamma-tubulin complex component 4 | protein | 521 | 63% helix, 3% strand | Q9UGJ1 |
| J | Gamma-tubulin complex component 5 | protein | 534 | 65% helix, 0% strand | Q96RT8 |
| K | Gamma-tubulin complex component 4 | protein | 562 | 66% helix, 2% strand | Q9UGJ1 |
| L | Gamma-tubulin complex component 6 | protein | 566 | 60% helix, 1% strand | Q96RT7 |
| U, V, W, X, Y, Z | Tubulin gamma-1 chain | protein | 420 | 45% helix, 16% strand | P23258 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1084 | 0.87 | 0.87 | 123 | empty |
| 2 | 1071 | 0.85 | 0.86 | 101 | empty |
| 3 | 984 | 0.84 | 0.85 | 108 | empty |
| 4 | 1194 | 0.84 | 0.85 | 136 | empty |
| 5 | 1099 | 0.82 | 0.83 | 110 | empty |
Interfaces
30 interfaces between chains.
- H–V · 2237 Ų buried · 13 hydrogen bonds · protein-protein
- K–L · 2229 Ų buried · 13 hydrogen bonds · protein-protein
- a–b · 2223 Ų buried · 14 hydrogen bonds · protein-protein
- G–U · 2150 Ų buried · 13 hydrogen bonds · protein-protein
- L–Z · 2105 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 7QJ0 · Structure of recombinant human gamma-Tubulin Ring Complex 6-spoked assembly intermediate… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08AG7
- Every structure of UniProt Q96CW5
- Every structure of UniProt Q96RT8
- Every structure of UniProt Q9BSJ2
- Every structure of UniProt Q9UGJ1
- Every structure of UniProt Q96RT7
- Every structure of UniProt P23258
- Elsewhere: RCSB PDB 7QJ0 · PDBe 7QJ0 · UniProt Q08AG7 · UniProt Q96CW5 · UniProt Q96RT8 · UniProt Q9BSJ2 · UniProt Q9UGJ1 · UniProt Q96RT7 · UniProt P23258
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