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Crystal structure of a second homolog of R2-like ligand-binding oxidase in sulfolobus acidocaldarius (SAR2LOXII)
Analyse Crystal structure of a second homolog of R2-like ligand-binding oxidase in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QBK
- Type
- protein
- Length
- 284 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- R2-like ligand-binding oxidase (homolog II) from sulfolobus acidocaldarius
- UniProt
- Q4J9R6
- Ligands
- MN3, FE
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | R2-like ligand-binding oxidase (homolog II) from sulfolobus acidocaldarius | protein | 284 | 77% helix, 0% strand | Q4J9R6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.75 | 0.90 | 30 | empty |
| 2 | 132 | 0.41 | 0.75 | 22 | empty |
Compared structures
- 7QBK · Crystal structure of a second homolog of R2-like ligand-binding oxidase in Sulfolobus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4J9R6
- Elsewhere: RCSB PDB 7QBK · PDBe 7QBK · UniProt Q4J9R6
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