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Ligand · MN3

MN3 · Manganese (III) ion

MN3, Manganese (III) ion (Mn +3, 54.9 g/mol), in the MolNFT structures on GenesisL1: bound in 28 records (23 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
MN3
Formula
Mn +3
Class
metal
Structures
28
PDB entries
23

Binding sites

MN3 in 28 structures; the first of them:

  • 5DCR · R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor (short soak) · MN3 A401 · binds GLU69, GLU102, HIS105, GLU202
  • 5DCS · R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor (long soak) · MN3 A401 · binds GLU69, GLU102, HIS105
  • 5EKB · R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor… · MN3 A401 · binds GLU69, GLU102, HIS105, GLU202
  • 5IZE · Hantaan virus L protein cap-snatching endonuclease · MN3 A1001 · binds HIS36, ASP97, GLU110, VAL111
  • 5J1N · Lassa virus L protein cap-snatching endonuclease. Bound to one manganese ion · MN3 A1001 · binds ASP89, GLU102, LYS122
  • 6F65 · R2-like ligand-binding oxidase A171F mutant with aerobically reconstituted Mn/Fe cofactor · MN3 A402 · binds GLU69, VAL72, GLU102, HIS105, PHE171, TYR175, GLU202
  • 6Q99 · Ande virus L protein N-terminus mutant K124A · MN3 A301 · binds HIS36, ASP97, GLU110, VAL111
  • 6QK1 · R2-like ligand-binding oxidase Y175F mutant with aerobically reconstituted Mn/Fe cofactor · MN3 A402 · binds GLU69, GLU102, HIS105, GLU202
  • 6Y2N · Crystal structure of ribonucleotide reductase R2 subunit solved by serial synchrotron… · MN3 A401 · binds GLU101, GLU132, HIS135, GLU205, PHE209, GLU239, HIS242
  • 7KKU · X-ray Counterpart to Neutron Structure of Oxidized Human MnSOD · MN3 A201 · binds HIS26, HIS74, TRP123, ASP159, TRP161, HIS163
  • 6F65 · R2-like ligand-binding oxidase A171F mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds GLU69, GLU102, HIS105
  • 6F6C · R2-like ligand-binding oxidase V72A mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds GLU69, GLU102, HIS105, GLU202
  • 6F6F · R2-like ligand-binding oxidase V72I mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds GLU69, GLU102, HIS105
  • 6F6H · R2-like ligand-binding oxidase V72L mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds GLU69, GLU102, HIS105
  • 6F6L · R2-like ligand-binding oxidase Y162F mutant with aerobically reconstituted MN/FE cofactor · MN3 A401 · binds GLU69, GLU102, HIS105, GLU202
  • 6I90 · R2-like ligand-binding oxidase G68F mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds GLU69, GLU102, HIS105
  • 6KK8 · Xn joint refinement of manganese catalase from thermus thermophilus HB27 · MN3 A1001 · binds GLU70, GLU155, HIS188
  • 6Q99 · Ande virus L protein N-terminus mutant K124A · MN3 A301 · binds HIS36, ASP97, GLU110, VAL111
  • 6QJV · R2-like ligand-binding oxidase E69D mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds ASP69, GLU102, HIS105
  • 6QK1 · R2-like ligand-binding oxidase Y175F mutant with aerobically reconstituted MN/FE cofactor · MN3 A402 · binds GLU69, GLU102, HIS105, GLU202
  • 6QRZ · Crystal structure of R2-like ligand-binding oxidase from sulfolobus acidocaldarius solved… · MN3 A401 · binds GLU79, GLU112, HIS115, GLU214
  • 6QVV · Structure and function of phenuiviridae cap snatching endonucleases · MN3 A301 · binds HIS78, ASP113, GLU127, PHE128
  • 6QW0 · Structure and function of toscana virus cap snatching endonucleases · MN3 A301 · binds HIS78, ASP113, GLU127, PHE128

Residues it binds most

GLU 38, HIS 41, ASP 22, PHE 6, VAL 5, THR 4, TRP 2, GLY 2, SER 2, LYS 1 (residue and the binding sites it lines).

Found with

  • FE · Fe (III) ion
  • PLM · Palmitic acid
  • MN · Manganese (II) ion
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • OCA · Octanoic acid (caprylic acid)
  • PO4 · Phosphate ion
  • O · Oxygen atom
  • EDO · 1,2-ethanediol
  • MPD · (4S)-2-methyl-2,4-pentanediol

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