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Crystal structure of CD73 in complex with 4-nitrocatechol in the open form

Analyse Crystal structure of CD73 in complex with 4-nitrocatechol in the open form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7PBY
Type
protein
Length
524 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P21589
Ligands
4NC, ZN, CA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein524—P21589

Ligands and binding sites

  • 4NC · 4-nitrocatechol · ligand · 2 copies · chains A
  • ZN · Zinc ion · metal · 2 copies · chains A
  • CA · Calcium ion · metal · chains A
  • DMS · Dimethyl sulfoxide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7PBY · Crystal structure of CD73 in complex with 4-nitrocatechol in the open form · the same entry in another collection · chain A against A, TM-score 1.00
  • P21589 · AlphaFold monomer V2.0 prediction for 5'-nucleotidase (P21589) · a predicted model of the same protein · chain A against A, TM-score 0.69

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