Research workbench
Structure of the maltase BAAG2 from blastobotrys adeninivorans in complex with glucose
Analyse Structure of the maltase BAAG2 from blastobotrys adeninivorans in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7P07
- Type
- protein
- Length
- 1,144 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BAAG2
- EC
- 3.2.1.20
- Ligands
- MB3, GLC, CA
- Pockets
- 10 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BAAG2 (EC 3.2.1.20) | protein | 572 | 35% helix, 18% strand | — |
| B | BAAG2 (EC 3.2.1.20) | protein | 572 | 33% helix, 18% strand | — |
Ligands and binding sites
- MB3 · 1-methylpyrrolidin-2-one · ligand · 2 copies · chains A, B
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1109 | 0.84 | 0.86 | 110 | GLC |
| 2 | 670 | 0.78 | 0.83 | 69 | GLC |
| 3 | 75 | 0.48 | 0.83 | 23 | empty |
| 4 | 192 | 0.44 | 0.74 | 33 | empty |
| 5 | 51 | 0.42 | 0.84 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 713 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 7P07 · Structure of the maltase BaAG2 from Blastobotrys adeninivorans in complex with glucose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7P07 · PDBe 7P07
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