Research workbench
Ttslyd with pseudo-wild-type S2 peptide
Analyse Ttslyd with pseudo-wild-type S2 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OXH
- Type
- protein
- Length
- 168 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidyl-prolyl cis-trans isomerase; 30S ribosomal protein S2; Fragment of 30S ribosomal…
- EC
- 5.2.1.8
- UniProt
- Q5SLE7, P0A7V0
- Ligands
- NI, CL
Structure
x-ray diffraction · 3 distinct chains · 13% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) | protein | 155 | 14% helix, 45% strand | Q5SLE7 |
| B | 30S ribosomal protein S2 | protein | 11 | 0% helix, 9% strand | P0A7V0 |
| E | Fragment of 30S ribosomal protein S2 peptide | protein | 2 | 0% helix, 0% strand | — |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · 3 copies · chains A, E
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–B · 742 Ų buried · 10 hydrogen bonds · protein-protein
- A–E · 140 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7OXH · ttSlyD with pseudo-wild-type S2 peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SLE7
- Every structure of UniProt P0A7V0
- Elsewhere: RCSB PDB 7OXH · PDBe 7OXH · UniProt Q5SLE7 · UniProt P0A7V0
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