Research workbench
Crystal structure of pig purple acid phosphatase in complex with L- glutamine, (POLY)ETHYLENE glycol fragments and glycerol
Analyse Crystal structure of pig purple acid phosphatase in complex with L- glutamine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OV2
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tartrate-resistant acid phosphatase type 5
- EC
- 3.1.3.2
- UniProt
- P09889
- Ligands
- GLN, NAG, BMA, FE, NA, PO4
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tartrate-resistant acid phosphatase type 5 (EC 3.1.3.2) | protein | 302 | 27% helix, 25% strand | P09889 |
Ligands and binding sites
- GLN · Glutamine · ligand · 28 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies
- FE · Fe (III) ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 17 copies · chains A
- GOL · Glycerol · additive · 13 copies · chains A
- PGE · Triethylene glycol · additive · 8 copies · chains A
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A
- P6G · Hexaethylene glycol · additive · chains A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 7OV2 · Crystal structure of pig purple acid phosphatase in complex with L-glutamine… · the same entry in another collection · chain A against A, TM-score 1.00
- P09889 · AlphaFold monomer V2.0 prediction for tartrate-resistant acid phosphatase type 5 (P09889) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09889
- Elsewhere: RCSB PDB 7OV2 · PDBe 7OV2 · UniProt P09889
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