Research workbench
Cryo-EM structure of the atv rnap inhibitory protein (rip) bound to the DNA-binding channel of the HOST'S RNA polymerase
Analyse Cryo-EM structure of the atv rnap inhibitory protein (rip) bound to the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OQ4
- Type
- protein
- Length
- 3,373 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11512, P11513, P11514, P39471, P39466, Q4JB12, Q4JAY4, P11521, P39463, P46217, P39472, Q4JAE8, Q4JAJ6, Q3V4R7
- Ligands
- F3S, ZN, MG
Structure
electron microscopy · 14 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 880 | — | P11512 |
| B | — | protein | 1101 | — | P11513 |
| C | — | protein | 393 | — | P11514 |
| D | — | protein | 254 | — | P39471 |
| E | — | protein | 72 | — | P39466 |
| F | — | protein | 27 | — | Q4JB12 |
| G | — | protein | 121 | — | Q4JAY4 |
| H | — | protein | 76 | — | P11521 |
| K | — | protein | 85 | — | P39463 |
| L | — | protein | 90 | — | P46217 |
| N | — | protein | 66 | — | P39472 |
| P | — | protein | 47 | — | Q4JAE8 |
| Q | — | protein | 43 | — | Q4JAJ6 |
| Z | — | protein | 118 | — | Q3V4R7 |
Ligands and binding sites
- F3S · FE3-S4 cluster · ligand · chains D
- ZN · Zinc ion · metal · 6 copies · chains A, B, N, P
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OQ4 · Cryo-EM structure of the ATV RNAP Inhibitory Protein (RIP) bound to the DNA-binding… · the same entry in another collection · chain Z against Z, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11512
- Every structure of UniProt P11513
- Every structure of UniProt P11514
- Every structure of UniProt P39471
- Every structure of UniProt P39466
- Every structure of UniProt Q4JB12
- Every structure of UniProt Q4JAY4
- Every structure of UniProt P11521
- Every structure of UniProt P39463
- Every structure of UniProt P46217
- Every structure of UniProt P39472
- Every structure of UniProt Q4JAE8
- Every structure of UniProt Q4JAJ6
- Every structure of UniProt Q3V4R7
- Elsewhere: RCSB PDB 7OQ4 · PDBe 7OQ4 · UniProt P11512 · UniProt P11513 · UniProt P11514 · UniProt P39471 · UniProt P39466 · UniProt Q4JB12 · UniProt Q4JAY4 · UniProt P11521 · UniProt P39463 · UniProt P46217 · UniProt P39472 · UniProt Q4JAE8 · UniProt Q4JAJ6 · UniProt Q3V4R7
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