UniProt P39471
DNA-directed RNA polymerase subunit D (P39471)
DNA-directed RNA polymerase subunit D (UniProt P39471), EC 2.7.7.6: 6 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 14 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P39471
- Protein
- DNA-directed RNA polymerase subunit D
- EC
- 2.7.7.6
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 14 · 3 records with a druggable one
Structures
7 records of P39471 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7OK0 | Cryo-EM structure of the Sulfolobus acidocaldarius RNA polymerase at 2.88 A | electron microscopy | D | F3S | 5 (best 0.78) |
| 7OK0 | Cryo-EM structure of the sulfolobus acidocaldarius RNA polymerase at 2.88 a | electron microscopy | D | F3S | — |
| 7OQ4 | Cryo-EM structure of the ATV RNAP Inhibitory Protein (RIP) bound to the DNA-binding channel of the… | electron microscopy | D | F3S | 4 (best 0.76) |
| 7OQ4 | Cryo-EM structure of the atv rnap inhibitory protein (rip) bound to the DNA-binding channel of the… | electron microscopy | D | F3S | — |
| 7OQY | Cryo-EM structure of the cellular negative regulator TFS4 bound to the archaeal RNA polymerase | electron microscopy | D | F3S | 3 (best 0.80) |
| 7OQY | Cryo-EM structure of the cellular negative regulator TFS4 bound to the archaeal RNA polymerase | electron microscopy | D | F3S | — |
| P39471 | AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit D (P39471) | predicted | A | — | 2 (best 0.31) |
Ligands
- F3S · FE3-S4 cluster · in 6 records
Experiment against prediction
- 7OQ4 chain D against the predicted model P39471: TM-score 0.98, RMSD 0.94 Å
- 7OQ4 chain D against the predicted model P39471: TM-score 0.98, RMSD 0.94 Å
- 7OQY chain D against the predicted model P39471: TM-score 0.96, RMSD 1.19 Å
- 7OQY chain D against the predicted model P39471: TM-score 0.96, RMSD 1.19 Å
- 7OK0 chain D against the predicted model P39471: TM-score 0.96, RMSD 1.29 Å
- 7OK0 chain D against the predicted model P39471: TM-score 0.96, RMSD 1.29 Å
Elsewhere
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