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Cyanophage S-2L succinoaminodeoxyadenylate synthetase (purz) bound to dgmp and datp as an energy donor

Analyse Cyanophage S-2L succinoaminodeoxyadenylate synthetase (purz) bound to dgmp and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7ODX
Type: protein
Length: 350 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Succinoaminodeoxyadenylate synthetase (purz)
Ligands: DGP, DTP
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Succinoaminodeoxyadenylate synthetase (purz)	protein	350	35% helix, 21% strand	—

Ligands and binding sites

DGP · 2'-deoxyguanosine-5'-monophosphate · ligand · chains A
DTP · 2'-deoxyadenosine 5'-triphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	724	0.76	0.81	86	DGP, DTP

Compared structures

7ODX · Cyanophage S-2L Succinoaminodeoxyadenylate synthetase (PurZ) bound to dGMP and dATP as an… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7ODX · PDBe 7ODX

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