Research workbench
Pilc minor pilin of streptococcus sanguinis 2908 type IV pili
Analyse Pilc minor pilin of streptococcus sanguinis 2908 type IV pili in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OA7
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilc minor pilin
- UniProt
- A0A0B7GRV8
- Ligands
- NA, CA
- Pockets
- 5 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilc minor pilin | protein | 350 | 5% helix, 44% strand | A0A0B7GRV8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.44 | 0.78 | 25 | empty |
| 2 | 70 | 0.35 | 0.76 | 12 | empty |
| 3 | 86 | 0.35 | 0.75 | 20 | empty |
| 4 | 67 | 0.31 | 0.75 | 16 | empty |
| 5 | 60 | 0.27 | 0.72 | 16 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 7OA7 · PilC minor pilin of Streptococcus sanguinis 2908 type IV pili · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B7GRV8
- Elsewhere: RCSB PDB 7OA7 · PDBe 7OA7 · UniProt A0A0B7GRV8
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