Research workbench
Mycobacterium smegmatis ATP synthase fo state 3
Analyse Mycobacterium smegmatis ATP synthase fo state 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NL9
- Type
- protein
- Length
- 1,269 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP synthase subunit alpha; ATP synthase gamma chain; ATP synthase epsilon chain; ATP…
- EC
- 7.1.2.2
- UniProt
- A0R202, A0R201, A0R1Z9, A0R205, A0R206, A0R204, A0R203
- Pockets
- 10 · best druggability 0.83
Structure
electron microscopy · 7 distinct chains · 65% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | ATP synthase subunit alpha (EC 7.1.2.2) | protein | 8 | 0% helix, 25% strand | A0R202 |
| G | ATP synthase gamma chain | protein | 42 | 38% helix, 10% strand | A0R201 |
| H | ATP synthase epsilon chain | protein | 101 | 17% helix, 41% strand | A0R1Z9 |
| L, M, N, O, P, Q, R, S, T | ATP synthase subunit C | protein | 84 | 88% helix, 0% strand | A0R205 |
| a | ATP synthase subunit a | protein | 238 | 71% helix, 5% strand | A0R206 |
| b | ATP synthase subunit B | protein | 63 | 86% helix, 0% strand | A0R204 |
| d | ATP synthase subunit B-delta | protein | 61 | 97% helix, 0% strand | A0R203 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 564 | 0.83 | 0.88 | 64 | empty |
| 2 | 843 | 0.71 | 0.76 | 77 | empty |
| 3 | 186 | 0.70 | 0.88 | 33 | empty |
| 4 | 52 | 0.69 | 0.97 | 19 | empty |
| 5 | 102 | 0.67 | 0.89 | 7 | empty |
Interfaces
31 interfaces between chains.
- L–T · 1730 Ų buried · 6 hydrogen bonds · protein-protein
- L–M · 1686 Ų buried · 7 hydrogen bonds · protein-protein
- a–b · 1676 Ų buried · 10 hydrogen bonds · protein-protein
- O–P · 1673 Ų buried · 9 hydrogen bonds · protein-protein
- P–Q · 1669 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 7NL9 · Mycobacterium smegmatis ATP synthase Fo state 3 · the same entry in another collection · chain d against d, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0R202
- Every structure of UniProt A0R201
- Every structure of UniProt A0R1Z9
- Every structure of UniProt A0R205
- Every structure of UniProt A0R206
- Every structure of UniProt A0R204
- Every structure of UniProt A0R203
- Elsewhere: RCSB PDB 7NL9 · PDBe 7NL9 · UniProt A0R202 · UniProt A0R201 · UniProt A0R1Z9 · UniProt A0R205 · UniProt A0R206 · UniProt A0R204 · UniProt A0R203
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