Research workbench
Mycobacterium smegmatis ATP synthase F1 state 2
Analyse Mycobacterium smegmatis ATP synthase F1 state 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NKH
- Type
- protein
- Length
- 2,959 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0R202, A0R200, A0R201
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 493 | — | A0R202 |
| B | — | protein | 486 | — | A0R202 |
| C | — | protein | 492 | — | A0R202 |
| D | — | protein | 467 | — | A0R200 |
| E | — | protein | 464 | — | A0R200 |
| F | — | protein | 468 | — | A0R200 |
| G | — | protein | 89 | — | A0R201 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, D, B, E, C, F
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains C, D, E
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NKH · Mycobacterium smegmatis ATP synthase F1 state 2 · the same entry in another collection · chain G against G, TM-score 1.00
- A0R202 · AlphaFold monomer V2.0 prediction for ATP synthase subunit alpha (A0R202) · a predicted model of the same protein · chain C against A, TM-score 0.99
- A0R200 · AlphaFold monomer V2.0 prediction for ATP synthase subunit beta (A0R200) · a predicted model of the same protein · chain E against A, TM-score 0.97
- A0R201 · AlphaFold monomer V2.0 prediction for ATP synthase gamma chain (A0R201) · a predicted model of the same protein · chain G against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0R202
- Every structure of UniProt A0R200
- Every structure of UniProt A0R201
- Elsewhere: RCSB PDB 7NKH · PDBe 7NKH · UniProt A0R202 · UniProt A0R200 · UniProt A0R201
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