Research workbench
State 3 of tcdb and FZD2 at PH5
Analyse State 3 of tcdb and FZD2 at PH5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7N9Q
- Type
- protein
- Length
- 2,315 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Toxin B
- EC
- 3.4.22.-
- UniProt
- P18177
- Pockets
- 12 · best druggability 0.62
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Toxin B (EC 3.4.22.-) | protein | 2315 | 0% helix, 0% strand | P18177 |
Pockets
12 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 698 | 0.62 | 0.73 | 99 | empty |
| 2 | 288 | 0.48 | 0.72 | 48 | empty |
| 3 | 250 | 0.46 | 0.72 | 47 | empty |
| 4 | 223 | 0.43 | 0.72 | 49 | empty |
| 5 | 173 | 0.40 | 0.72 | 34 | empty |
Compared structures
- 7N9Q · State 3 of TcdB and FZD2 at pH5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18177
- Elsewhere: RCSB PDB 7N9Q · PDBe 7N9Q · UniProt P18177
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