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Crystal structure of aged 9-site deamidated variant of human GAMMA(S)- crystallin

Analyse Crystal structure of aged 9-site deamidated variant of human GAMMA(S)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7N3B
Type: protein
Length: 348 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gamma-crystallin S
UniProt: P22914
Pockets: 2 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Gamma-crystallin S	protein	174	13% helix, 45% strand	P22914

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	543	0.60	0.74	52	empty
2	91	0.38	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 251 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

7N3B · Crystal structure of aged 9-site deamidated variant of human gamma(S)-crystallin · the same entry in another collection · chain A against A, TM-score 1.00
P22914 · AlphaFold monomer V2.0 prediction for gamma-crystallin S (P22914) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22914
Elsewhere: RCSB PDB 7N3B · PDBe 7N3B · UniProt P22914

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