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Crystal structure of the ucld lectin-binding domain

Analyse Crystal structure of the ucld lectin-binding domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7MZP
Type: protein
Length: 375 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: F17-like fimbril adhesin subunit ucld
UniProt: A0A1X9VGE7
Ligands: IOD
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	F17-like fimbril adhesin subunit ucld	protein	187	7% helix, 53% strand	A0A1X9VGE7
B	F17-like fimbril adhesin subunit ucld	protein	188	7% helix, 53% strand	A0A1X9VGE7

Ligands and binding sites

IOD · Iodide ion · ion · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	588	0.64	0.75	71	IOD

Interfaces

1 interface between chains.

A–B · 209 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

7MZP · Crystal structure of the UclD lectin-binding domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1X9VGE7
Elsewhere: RCSB PDB 7MZP · PDBe 7MZP · UniProt A0A1X9VGE7

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