Research workbench
Solution structure of berberine bound to a dgmp fill-in G-quadruplex in the pdgfr-B promoter
Analyse Solution structure of berberine bound to a dgmp fill-in G-quadruplex in the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MSV
- Type
- DNA
- Length
- 19 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*AP*CP*A)-3')
- Ligands
- BER, DGP
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | DNA (5'- D(*AP*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*AP*CP*A)-3') | dna | 19 | — | — |
Ligands and binding sites
- BER · Berberine · ligand · 2 copies · chains X
- DGP · 2'-deoxyguanosine-5'-monophosphate · ligand · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MSV · Solution Structure of Berberine Bound to a dGMP Fill-in G-Quadruplex in the PDGFR-b… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7MSV · PDBe 7MSV
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.