Research workbench
Maize rayado fino virus protease in complex with ubiquitin
Analyse Maize rayado fino virus protease in complex with ubiquitin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MIC
- Type
- protein
- Length
- 219 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA replication protein; Ubiquitin
- UniProt
- Q91TW9, P0CG48
- Ligands
- 3CN
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA replication protein | protein | 144 | 38% helix, 27% strand | Q91TW9 |
| B | Ubiquitin | protein | 75 | 24% helix, 35% strand | P0CG48 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 253 | 0.63 | 0.82 | 36 | empty |
| 2 | 57 | 0.35 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1082 Ų buried · 32 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 7MIC · Maize rayado fino virus protease in complex with Ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91TW9
- Every structure of UniProt P0CG48
- Elsewhere: RCSB PDB 7MIC · PDBe 7MIC · UniProt Q91TW9 · UniProt P0CG48
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.