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Mofe protein from azotobacter vinelandii with a sulfur-replenished cofactor

Analyse Mofe protein from azotobacter vinelandii with a sulfur-replenished cofactor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7MCI
Type
protein
Length
1,998 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P07328, C1DGZ8
Ligands
HCA, ICS, CLF, MO, CA, H2S

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, C—protein477—P07328
B, D—protein522—C1DGZ8

Ligands and binding sites

  • HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, C
  • ICS · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · 2 copies · chains A, C
  • CLF · FE(8)-S(7) cluster · ligand · 2 copies · chains A, B, C, D
  • MO · Molybdenum atom · metal · 6 copies · chains A, C
  • CA · Calcium ion · metal · 2 copies · chains B, D
  • H2S · Hydrosulfuric acid · ion · 2 copies · chains A, B, C, D
  • GOL · Glycerol · additive · 11 copies · chains B, C, D, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7MCI · MoFe protein from Azotobacter vinelandii with a sulfur-replenished cofactor · the same entry in another collection · chain A against A, TM-score 1.00
  • P07328 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain… · a predicted model of the same protein · chain A against A, TM-score 1.00

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