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X-ray crystal structure of protein SPYM3_0169 from streptococcus pyogenes. northeast structural genomics consortium target DR2.

Analyse X-ray crystal structure of protein SPYM3_0169 from streptococcus pyogenes.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1PG6
Type: protein
Length: 216 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein SPYM3_0169
UniProt: Q8P2Q3
Ligands: CA
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein SPYM3_0169	protein	216	14% helix, 49% strand	Q8P2Q3

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	308	0.59	0.78	40	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

1PG6 · X-Ray Crystal Structure of Protein SPYM3_0169 from Streptococcus pyogenes. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8P2Q3
Elsewhere: RCSB PDB 1PG6 · PDBe 1PG6 · UniProt Q8P2Q3

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