Research workbench
Cryoem structure of escherichia COLI PBP1B
Analyse Cryoem structure of escherichia COLI PBP1B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LQ6
- Type
- protein
- Length
- 672 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein 1B
- EC
- 2.4.1.129, 3.4.16.4
- UniProt
- P02919
- Pockets
- 7 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 1B (EC 2.4.1.129, 3.4.16.4) | protein | 672 | 35% helix, 19% strand | P02919 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 743 | 0.77 | 0.81 | 83 | empty |
| 2 | 246 | 0.56 | 0.77 | 30 | empty |
| 3 | 190 | 0.48 | 0.76 | 29 | empty |
| 4 | 153 | 0.48 | 0.77 | 22 | empty |
| 5 | 112 | 0.38 | 0.75 | 24 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02919
- Elsewhere: RCSB PDB 7LQ6 · PDBe 7LQ6 · UniProt P02919
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