Research workbench
Crystal structure of epoxyqueuosine reductase queh in complex with gmp from thermotoga maritima
Analyse Crystal structure of epoxyqueuosine reductase queh in complex with gmp from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LC7
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Epoxyqueuosine reductase queh
- EC
- 1.17.99.6
- UniProt
- Q9WZJ0
- Ligands
- SF4, 5GP, FE, CL
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Epoxyqueuosine reductase queh (EC 1.17.99.6) | protein | 178 | 56% helix, 11% strand | Q9WZJ0 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- 5GP · Guanosine-5'-monophosphate · ligand · chains A
- FE · Fe (III) ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.67 | 0.86 | 35 | SF4, 5GP, CL |
Compared structures
- 7LC7 · Crystal structure of epoxyqueuosine reductase QueH in complex with GMP from Thermotoga… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9WZJ0 · AlphaFold monomer V2.0 prediction for epoxyqueuosine reductase queh (Q9WZJ0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZJ0
- Elsewhere: RCSB PDB 7LC7 · PDBe 7LC7 · UniProt Q9WZJ0
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