Research workbench
Crystal structure of campylobacter jejuni CJ0843C lytic transglycosylase in complex with N,N',N''-triacetylchitotriose
Analyse Crystal structure of campylobacter jejuni CJ0843C lytic transglycosylase in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LAM
- Type
- protein
- Length
- 517 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lytic transglycosylase domain-containing protein
- UniProt
- A0A3I4HTM2
- Ligands
- NAG
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lytic transglycosylase domain-containing protein | protein | 517 | 61% helix, 1% strand | A0A3I4HTM2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
- CIT · Citric acid · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 697 | 0.72 | 0.78 | 81 | NAG, ACT |
| 2 | 105 | 0.38 | 0.75 | 18 | empty |
| 3 | 54 | 0.35 | 0.79 | 16 | empty |
| 4 | 56 | 0.33 | 0.77 | 11 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7LAM · Crystal structure of Campylobacter jejuni Cj0843c lytic transglycosylase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3I4HTM2
- Elsewhere: RCSB PDB 7LAM · PDBe 7LAM · UniProt A0A3I4HTM2
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