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Human methionine adenosyltransferase 2A bound to methylthioadenosine and inhibitor, di-imido triphosphate (pnpnp)

Analyse Human methionine adenosyltransferase 2A bound to methylthioadenosine and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7L1A
Type
protein
Length
380 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
S-adenosylmethionine synthase isoform type-2
EC
2.5.1.6
UniProt
P31153
Ligands
XE1, MTA, ALA, NA, MG, K

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AS-adenosylmethionine synthase isoform type-2 (EC 2.5.1.6)protein38034% helix, 26% strandP31153

Ligands and binding sites

  • XE1 · N,N'-(dihydroxy-lambda~5~-phosphanediyl) bis(phosphoramidic acid) · ligand · chains A
  • MTA · 5'-deoxy-5'-methylthioadenosine · ligand · chains A
  • ALA · Alanine · ligand · chains A
  • NA · Sodium ion · metal · 6 copies · chains A
  • MG · Magnesium ion · metal · 2 copies · chains A
  • K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7L1A · Human Methionine Adenosyltransferase 2A bound to Methylthioadenosine and inhibitor… · the same entry in another collection · chain A against A, TM-score 1.00
  • P31153 · AlphaFold monomer V2.0 prediction for S-adenosylmethionine synthase isoform type-2… · a predicted model of the same protein · chain A against A, TM-score 0.99

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