Research workbench
Crystal structure of squash RNA aptamer in complex with dfhbi-1T
Analyse Crystal structure of squash RNA aptamer in complex with dfhbi-1T in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KVU
- Type
- RNA
- Length
- 83 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- 2ZY, MG, K
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | rna | 83 | — | — |
Ligands and binding sites
- 2ZY · (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one · ligand · chains G
- MG · Magnesium ion · metal · 4 copies · chains G
- K · Potassium ion · metal · 3 copies · chains G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KVU · Crystal structure of Squash RNA aptamer in complex with DFHBI-1T · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7KVU · PDBe 7KVU
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