GL1X · GenesisL1 explorer

Ligand · 2ZY

2ZY · (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one

2ZY, (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one (C13 H9 F5 N2 O2, 320.2 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (7 PDB entries). Every binding site…

Component
2ZY
Formula
C13 H9 F5 N2 O2
Class
ligand
Structures
11
PDB entries
7

Binding sites

2ZY in 11 structures; the first of them:

  • 4Q9R · Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with… · 2ZY R102 · binds G22, G23, G28, U29, U50, A53, G54, A58 and 1 more
  • 7KVT · Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions · 2ZY B101 · binds G13, G14, U15, U39, A40, A48, A69, A70
  • 7KVU · Crystal structure of Squash RNA aptamer in complex with DFHBI-1T · 2ZY G106 · binds G13, G14, U15, U39, A40, A48, A69, A70
  • 7L0Z · Spinach variant bound to DFHBI-1T · 2ZY G101 · binds G15, G16, G21, U22, U42, A45, G46, A50 and 1 more
  • 8FHV · Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions · 2ZY A107 · binds DG10, DA11, DT12, DC17, DG18, DG19, DC20, DG25 and 2 more
  • 8FHX · Structure of Lettuce aptamer bound to DFHBI-1T · 2ZY A107 · binds DG10, DA11, DC17, DG18, DG19, DC20, DG25, DG26 and 1 more
  • 8FI2 · Structure of Lettuce C20T bound to DFHBI-1T · 2ZY A106 · binds DA11, DC17, DG18, DG19, DT20, DG25, DG26, DG44
  • 4Q9R · Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with… · 2ZY R102 · binds G22, G23, G28, U29, U50, A53, G54, A58 and 1 more
  • 7KVT · Crystal structure of squash RNA aptamer in complex with dfhbi-1T with iridium (III) ions · 2ZY B101 · binds G13, G14, U15, U39, A40, A48, A69, A70
  • 7KVU · Crystal structure of squash RNA aptamer in complex with dfhbi-1T · 2ZY G106 · binds G13, G14, U15, U39, A40, A48, A69, A70
  • 7L0Z · Spinach variant bound to dfhbi-1T · 2ZY G101 · binds G15, G16, G21, U22, U42, A45, G46, A50 and 1 more

Residues it binds most

G 8, A 8, DG 3, U 8, DC 3, DA 3, DT 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • K · Potassium ion
  • IRI · Iridium hexammine ion
  • SPM · Spermine
  • NA · Sodium ion
  • PO4 · Phosphate ion
  • TL · Thallium (I) ion

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.