Research workbench
Dihydrodipicolinate synthase (dhdps) from C.JEJUNI, H59N mutant with pyruvate bound in the active site
Analyse Dihydrodipicolinate synthase (dhdps) from C.JEJUNI, H59N mutant with pyruvate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KLT
- Type
- protein
- Length
- 1,778 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9PPB4
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, E | — | protein | 296 | — | Q9PPB4 |
| C, F | — | protein | 297 | — | Q9PPB4 |
Ligands and binding sites
- MG · Magnesium ion · metal · 10 copies · chains A, B, C, E, F
- EDO · 1,2-ethanediol · additive · 26 copies · chains A, B, D, C, E, F
- ACT · Acetate ion · additive · 12 copies · chains A, C, B, D, E, F
- PG4 · Tetraethylene glycol · additive · 5 copies · chains A, B, C, D, E
- PGE · Triethylene glycol · additive · 5 copies · chains A, C, E, D, F
- PEG · Di(hydroxyethyl)ether · additive · 4 copies · chains A, C, E
- GOL · Glycerol · additive · 4 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KLT · Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59N mutant with pyruvate bound in… · the same entry in another collection · chain F against F, TM-score 1.00
- Q9PPB4 · AlphaFold monomer V2.0 prediction for 4-hydroxy- tetrahydrodipicolinate synthase (Q9PPB4) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PPB4
- Elsewhere: RCSB PDB 7KLT · PDBe 7KLT · UniProt Q9PPB4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.