Research workbench
Cryoem structure of a trehalose monomycolate transporter in lipid nanodiscs
Analyse Cryoem structure of a trehalose monomycolate transporter in lipid nanodiscs in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7K8B
- Type
- protein
- Length
- 726 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Drug exporters of the rnd superfamily-like protein
- UniProt
- I7G2R2
- Pockets
- 11 · best druggability 0.80
Structure
electron microscopy · 1 distinct chain · 64% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Drug exporters of the rnd superfamily-like protein | protein | 726 | 64% helix, 4% strand | I7G2R2 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.80 | 0.97 | 36 | empty |
| 2 | 993 | 0.79 | 0.80 | 77 | empty |
| 3 | 55 | 0.67 | 0.96 | 19 | empty |
| 4 | 372 | 0.66 | 0.80 | 46 | empty |
| 5 | 54 | 0.63 | 0.94 | 25 | empty |
Compared structures
- 7K8B · CryoEM structure of a trehalose monomycolate transporter in lipid nanodiscs · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I7G2R2
- Elsewhere: RCSB PDB 7K8B · PDBe 7K8B · UniProt I7G2R2
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