Research workbench

The crystal structure of the 2009 H1N1 pa endonuclease in complex with SJ000986436

Analyse The crystal structure of the 2009 H1N1 pa endonuclease in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7K87
Type: protein
Length: 181 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein pa-X
UniProt: A0A4D6EED0, C6H0Y9
Ligands: QQ4, W5V, MN
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein pa-X	protein	181	52% helix, 13% strand	A0A4D6EED0, C6H0Y9

Ligands and binding sites

QQ4 · Hexa Vinylpyrrolidone K15 · ligand · chains A
W5V · 2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide · ligand · chains A
MN · Manganese (II) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	448	0.64	0.77	45	MN, W5V

Compared structures

7K87 · The crystal structure of the 2009 H1N1 PA endonuclease in complex with SJ000986436 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A4D6EED0
Every structure of UniProt C6H0Y9
Elsewhere: RCSB PDB 7K87 · PDBe 7K87 · UniProt A0A4D6EED0 · UniProt C6H0Y9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.