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The structure of CBM51-2 and int domains from clostridium perfringens zmpb
Analyse The structure of CBM51-2 and int domains from clostridium perfringens zmpb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7JRM
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- F5/8 type C domain protein
- UniProt
- A0A0H2YN38
- Ligands
- CA
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | F5/8 type C domain protein | protein | 455 | 18% helix, 40% strand | A0A0H2YN38 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.42 | 0.77 | 20 | empty |
| 2 | 100 | 0.36 | 0.74 | 20 | empty |
| 3 | 80 | 0.32 | 0.74 | 16 | empty |
| 4 | 56 | 0.27 | 0.74 | 14 | empty |
Compared structures
- 7JRM · The structure of CBM51-2 and INT domains from Clostridium perfringens ZmpB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H2YN38
- Elsewhere: RCSB PDB 7JRM · PDBe 7JRM · UniProt A0A0H2YN38
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