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Cryo-EM structure of human ATG9A in nanodiscs

Analyse Cryo-EM structure of human ATG9A in nanodiscs in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7JLP
Type: protein
Length: 1,455 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q7Z3C6
Ligands: POV

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	—	protein	485	—	Q7Z3C6

Ligands and binding sites

POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · ligand · 45 copies · chains A, C, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7JLP · cryo-EM structure of human ATG9A in nanodiscs · the same entry in another collection · chain A against A, TM-score 1.00
Q7Z3C6 · AlphaFold monomer V2.0 prediction for autophagy-related protein 9A (Q7Z3C6) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7Z3C6
Elsewhere: RCSB PDB 7JLP · PDBe 7JLP · UniProt Q7Z3C6

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