Research workbench
Alpha-1,2-GLUCOSYLTRANSFERASE_UDP_TLL1591
Analyse Alpha-1,2-GLUCOSYLTRANSFERASE_UDP_TLL1591 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FG9
- Type
- protein
- Length
- 682 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl transferase
- UniProt
- Q8DIJ4
- Ligands
- UDP
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glycosyl transferase | protein | 341 | 41% helix, 15% strand | Q8DIJ4 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1013 | 0.79 | 0.80 | 109 | UDP |
| 2 | 665 | 0.77 | 0.82 | 67 | UDP |
| 3 | 59 | 0.41 | 0.81 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 592 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 7FG9 · Alpha-1,2-glucosyltransferase_UDP_tll1591 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DIJ4
- Elsewhere: RCSB PDB 7FG9 · PDBe 7FG9 · UniProt Q8DIJ4
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