Research workbench

De novo design protein D53 with mbp tag

Analyse De novo design protein D53 with mbp tag in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7FBD
Type: protein
Length: 894 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maltodextrin-binding PROTEIN,DE novo design protein D53
UniProt: A0A4P1LXE0
Pockets: 8 · best druggability 0.69

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Maltodextrin-binding PROTEIN,DE novo design protein D53	protein	444	51% helix, 18% strand	A0A4P1LXE0
A	Maltodextrin-binding PROTEIN,DE novo design protein D53	protein	450	49% helix, 16% strand	A0A4P1LXE0

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	638	0.69	0.77	62	empty
2	522	0.67	0.77	62	empty
3	558	0.66	0.77	66	empty
4	96	0.47	0.80	22	empty
5	117	0.46	0.78	19	empty

Interfaces

1 interface between chains.

B–A · 436 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

7FBD · De novo design protein D53 with MBP tag · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A4P1LXE0
Elsewhere: RCSB PDB 7FBD · PDBe 7FBD · UniProt A0A4P1LXE0

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