Research workbench

De novo design protein D12 with mbp tag

Analyse De novo design protein D12 with mbp tag in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7FBB
Type: protein
Length: 879 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maltodextrin-binding PROTEIN,DE novo designed protein D12
UniProt: A0A4P1LXE0
Pockets: 9 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 51% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maltodextrin-binding PROTEIN,DE novo designed protein D12	protein	442	50% helix, 17% strand	A0A4P1LXE0
B	Maltodextrin-binding PROTEIN,DE novo designed protein D12	protein	437	51% helix, 18% strand	A0A4P1LXE0

Pockets

9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	617	0.73	0.80	59	empty
2	275	0.56	0.76	36	empty
3	184	0.52	0.78	31	empty
4	229	0.51	0.75	30	empty
5	92	0.46	0.81	19	empty

Interfaces

1 interface between chains.

A–B · 1030 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

7FBB · De novo design protein D12 with MBP tag · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A4P1LXE0
Elsewhere: RCSB PDB 7FBB · PDBe 7FBB · UniProt A0A4P1LXE0

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