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Indole-2-carboxylic acid derivatives as allosteric inhibitors of fructose-1,6-bisphosphatase
Analyse Indole-2-carboxylic acid derivatives as allosteric inhibitors of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EZP
- Type
- protein
- Length
- 1,277 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fructose-1,6-bisphosphatase 1
- EC
- 3.1.3.11
- UniProt
- P09467
- Ligands
- FBP, 0GI
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 3 distinct chains · 38% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Fructose-1,6-bisphosphatase 1 (EC 3.1.3.11) | protein | 320 | 38% helix, 24% strand | P09467 |
| B | Fructose-1,6-bisphosphatase 1 (EC 3.1.3.11) | protein | 319 | 38% helix, 25% strand | P09467 |
| C | Fructose-1,6-bisphosphatase 1 (EC 3.1.3.11) | protein | 318 | 37% helix, 24% strand | P09467 |
Ligands and binding sites
- FBP · 1,6-di-O-phosphono-beta-D-fructofuranose · ligand · 4 copies · chains A, B, C, D
- 0GI · 3-(3-hydroxy-3-oxopropyl)-5-(2-methylpropyl)-7-nitro-1H-indole-2-carboxylic acid · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 994 | 0.84 | 0.84 | 94 | empty |
| 2 | 483 | 0.66 | 0.78 | 59 | 0GI |
| 3 | 190 | 0.57 | 0.80 | 29 | 0GI |
| 4 | 252 | 0.57 | 0.78 | 40 | FBP |
| 5 | 182 | 0.53 | 0.79 | 24 | FBP |
Interfaces
6 interfaces between chains.
- A–B · 2501 Ų buried · 32 hydrogen bonds · protein-protein
- C–D · 2460 Ų buried · 30 hydrogen bonds · protein-protein
- A–C · 1219 Ų buried · 23 hydrogen bonds · protein-protein
- B–D · 1122 Ų buried · 15 hydrogen bonds · protein-protein
- B–C · 459 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7EZP · Indole-2-carboxylic acid derivatives as allosteric inhibitors of… · the same entry in another collection · chain D against D, TM-score 1.00
- P09467 · AlphaFold monomer V2.0 prediction for fructose-1,6-bisphosphatase 1 (P09467) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09467
- Elsewhere: RCSB PDB 7EZP · PDBe 7EZP · UniProt P09467
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