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Glycosyltransferase in complex with udp and stb

Analyse Glycosyltransferase in complex with udp and stb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7ERX
Type: protein
Length: 405 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyltransferase
EC: 2.4.1.-
UniProt: Q0DPB7
Ligands: UDP, JC6
Pockets: 2 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyltransferase (EC 2.4.1.-)	protein	405	44% helix, 15% strand	Q0DPB7

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains A
JC6 · Steviolbioside · ligand · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	736	0.80	0.84	79	GOL, UDP, JC6
2	72	0.54	0.87	25	empty

Compared structures

7ERX · Glycosyltransferase in complex with UDP and STB · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0DPB7
Elsewhere: RCSB PDB 7ERX · PDBe 7ERX · UniProt Q0DPB7

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