Research workbench
Crystal structure of a pseudooxynicotine amine oxidase pnao from pseudomonas putida S16
Analyse Crystal structure of a pseudooxynicotine amine oxidase pnao from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E7H
- Type
- protein
- Length
- 863 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AMINO_OXIDASE domain-containing protein
- UniProt
- A0A0M3D0T5
- Ligands
- FAD
- Pockets
- 5 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AMINO_OXIDASE domain-containing protein | protein | 435 | 36% helix, 24% strand | A0A0M3D0T5 |
| B | AMINO_OXIDASE domain-containing protein | protein | 428 | 37% helix, 23% strand | A0A0M3D0T5 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- PGE · Triethylene glycol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 697 | 0.86 | 0.90 | 94 | FAD |
| 2 | 602 | 0.86 | 0.91 | 77 | FAD |
| 3 | 189 | 0.52 | 0.77 | 30 | empty |
| 4 | 184 | 0.50 | 0.77 | 30 | empty |
| 5 | 100 | 0.46 | 0.80 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1534 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 7E7H · Crystal Structure of a pseudooxynicotine amine oxidase Pnao from Pseudomonas putida S16 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M3D0T5
- Elsewhere: RCSB PDB 7E7H · PDBe 7E7H · UniProt A0A0M3D0T5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.