Research workbench
Crystal structure of pldbr
Analyse Crystal structure of pldbr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7E4D
- Type
- protein
- Length
- 643 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Double bond reductase
- UniProt
- A7HS36
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Double bond reductase | protein | 323 | 32% helix, 28% strand | A7HS36 |
| B | Double bond reductase | protein | 320 | 32% helix, 28% strand | A7HS36 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 586 | 0.68 | 0.77 | 74 | empty |
| 2 | 591 | 0.68 | 0.77 | 65 | empty |
| 3 | 112 | 0.59 | 0.85 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 706 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7E4D · Crystal structure of PlDBR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7HS36
- Elsewhere: RCSB PDB 7E4D · PDBe 7E4D · UniProt A7HS36
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