MolNFT v2 · #179175 · protein
Crystal structure of PlDBR
7E4D · Double Bond Reductase: “Crystal structure of PlDBR”. X-ray diffraction at 2.6, 3 pockets (best druggability 0.68). MolNFT v2 #179175 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7E4D
- Type
- protein
- Length
- 643 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.6
- Source
- Parvibaculum lavamentivorans DS-1
- Molecule
- Double Bond Reductase
- UniProt
- A7HS36
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · resolution 2.6 · 2 distinct chains · 32% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Double Bond Reductase | protein | 323 | 32% helix, 28% strand | A7HS36 |
| B | Double Bond Reductase | protein | 320 | 32% helix, 28% strand | A7HS36 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 587 | 0.68 | 0.77 | 74 | empty |
| 2 | 591 | 0.68 | 0.77 | 65 | empty |
| 3 | 112 | 0.59 | 0.85 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 706 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7E4D · Crystal structure of pldbr · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7HS36
- Elsewhere: RCSB PDB 7E4D · PDBe 7E4D · UniProt A7HS36
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