Research workbench
Structure of PFGRX1 in the intermediate state with cadmium and cesium
Analyse Structure of PFGRX1 in the intermediate state with cadmium and cesium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DIT
- Type
- protein
- Length
- 106 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutaredoxin
- EC
- 1.8.4.2
- UniProt
- Q9NLB2
- Ligands
- CD, CS, CL
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutaredoxin (EC 1.8.4.2) | protein | 106 | 53% helix, 17% strand | Q9NLB2 |
Ligands and binding sites
- CD · Cadmium ion · metal · 7 copies · chains A
- CS · Cesium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- MPO · 3[N-morpholino]propane sulfonic acid · additive · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide, 1 modified (disulfide, oxidation).
Compared structures
- 7DIT · Structure of PfGrx1 in the intermediate state with cadmium and cesium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NLB2
- Elsewhere: RCSB PDB 7DIT · PDBe 7DIT · UniProt Q9NLB2
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